Jonathan FLYE SAINTE MARIE

Ecologie marine / écophysiologie / modélisation

Maître de conférences
Université de Bretagne Occidentale

Assignment

Laboratoire LEMAR

Discovery

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Even, Y., Pousse, E., Chapperon, C., Artigaud, S., Hegaret, H., Bernay, B., Pichereau, V., Flye-Sainte-Marie, J., & Jean, F. (2022). Physiological and comparative proteomic analyzes reveal immune defense response of the king scallop Pecten maximus in presence of paralytic shellfish toxin (PST) from Alexandrium minutum. Harmful Algae, 115, 102231. https://doi.org/10.1016/j.hal.2022.102231 Cite
Even, Y., Pousse, E., Chapperon, C., Artigaud, S., Hegaret, H., Bernay, B., Pichereau, V., Flye-Sainte-Marie, J., & Jean, F. (2022). Physiological and comparative proteomic analyzes reveal immune defense response of the king scallop Pecten maximus in presence of paralytic shellfish toxin (PST) from Alexandrium minutum. Harmful Algae, 115, 102231. https://doi.org/10.1016/j.hal.2022.102231 Cite
Cueto‐Vega, R., Flye-Sainte-Marie, J., Aguirre‐Velarde, A., Jean, F., Gil‐Kodaka, P., & Thouzeau, G. (2021). Size‐based survival of cultured Argopecten purpuratus (L, 1819) under severe hypoxia. Journal of the World Aquaculture Society, jwas.12777. https://doi.org/10.1111/jwas.12777 Cite
Aguirre-Velarde, A., Thouzeau, G., Jean, F., Mendo, J., Cueto-Vega, R., Kawazo-Delgado, M., Vasquez-Spencer, J., Herrera-Sanchez, D., Vega-Espinoza, A., & Flye-Sainte-Marie, J. (2019). Chronic and severe hypoxic conditions in Paracas Bay, Pisco, Peru: Consequences on scallop growth, reproduction, and survival. Aquaculture, 512, UNSP 734259. https://doi.org/10.1016/j.aquaculture.2019.734259 Cite
Thomas, Y., Flye-Sainte-Marie, J., Chabot, D., Aguirre-Velarde, A., Marques, G., & Pecquerie, L. (2019). Effects of of hypoxia on metabolic functions in marine organisms: Observed patterns and modelling assumptions within the context of Dynamic Energy Budget (DEB) theory. Journal of Sea Research, 143, 231–242. https://archimer.ifremer.fr/doc/00473/58466/ ; https://doi.org/10.1016/j.seares.2018.05.001 Cite
Aguirre-Velarde, A., Pecquerie, L., Jean, F., Thouzeau, G., & Flye-Sainte-Marie, J. (2019). Predicting the energy budget of the scallop Argopecten purpuratus in an oxygen-limiting environment. Journal of Sea Research, 143, 254–261. fdi:010074833. https://doi.org/10.1016/j.seares.2018.09.011 Cite
Lavaud, R., Thomas, Y., Pecquerie, L., Benoit, H. P., Guyondet, T., Flye-Sainte-Marie, J., & Chabot, D. (2019). Modeling the impact of hypoxia on the energy budget of Atlantic cod in two populations of the Gulf of Saint-Lawrence, Canada. Journal of Sea Research, 143, 243–253. fdi:010074832. https://doi.org/10.1016/j.seares.2018.07.001 Cite
Lavaud, R., Jolivet, A., Rannou, E., Jean, F., Strand, O., & Flye-Sainte-Marie, J. (2019). What can the shell tell about the scallop? Using growth trajectories along latitudinal and bathymetric gradients to reconstruct physiological history with DEB theory. Journal of Sea Research, 143, 193–206. https://doi.org/10.1016/j.seares.2018.04.001 Cite
Lavaud, R., Rannou, E., Flye-Sainte-Marie, J., & Jean, F. (2019). Reconstructing physiological history from growth, a method to invert DEB models. Journal of Sea Research, 143, 183–192. https://doi.org/10.1016/j.seares.2018.07.007 Cite
Pousse, E., Flye-Sainte-Marie, J., Alunno-Bruscia, M., Hégaret, H., Rannou, E., Pecquerie, L., Marques, G. M., Thomas, Y., Castrec, J., Fabioux, C., Long, M., Lassudrie, M., Hermabessiere, L., Amzil, Z., Soudant, P., & Jean, F. (2019). Modelling paralytic shellfish toxins (PST) accumulation in Crassostrea gigas by using Dynamic Energy Budgets (DEB). Journal of Sea Research, 143, 152–164. https://archimer.ifremer.fr/doc/00455/56662/ ; fdi:010074830. https://doi.org/10.1016/j.seares.2018.09.002 Cite
Lavaud, R., Artigaud, S., Le Grand, F., Donval, A., Soudant, P., Flye-Sainte-Marie, J., Strohmeier, T., Strand, O., Leynaert, A., Beker, B., Chatterjee, A., & Jean, F. (2018). New insights into the seasonal feeding ecology of Pecten maximus using pigments, fatty acids and sterols analyses. Marine Ecology Progress Series, 590, 109–129. https://archimer.ifremer.fr/doc/00431/54244/. https://doi.org/10.3354/meps12476 Cite
Pousse, E., Flye-Sainte-Marie, J., Alunno-Bruscia, M., Hégaret, H., & Jean, F. (2018). Sources of paralytic shellfish toxin accumulation variability in the Pacific oyster Crassostrea gigas. Toxicon, 144, 14–22. http://www.sciencedirect.com/science/article/pii/S0041010117304166. https://doi.org/10.1016/j.toxicon.2017.12.050 Cite
Aguirre-Velarde, A., Jean, F., Thouzeau, G., & Flye-Sainte-Marie, J. (2018). Feeding behaviour and growth of the Peruvian scallop (Argopecten purpuratus) under daily cyclic hypoxia conditions. Journal of Sea Research, 131, 85–94. https://doi.org/10.1016/j.seares.2017.11.001 Cite
Leon-Palomino, C., Flores-Mego, J., Dionicio-Acedo, J., Rosado-Salazar, M., Flye-Sainte-Marie, J., & Aguirre-Velarde, A. (2017). Thermal preference and tolerance of Peruvian grunt Anisotremus scapularis juveniles (Pisces: Haemulidae). Revista De Biologia Marina Y Oceanografia, 52(3), 581–589. https://archimer.ifremer.fr/doc/00421/53294/. https://doi.org/10.4067/S0718-19572017000300014 Cite
Le Goff, C., Lavaud, R., Cugier, P., Jean, F., Flye-Sainte-Marie, J., Foucher, E., Desroy, N., Fifas, S., & Foveau, A. (2017). A coupled biophysical model for the distribution of the great scallop Pecten maximus in the English Channel. Journal of Marine Systems, 167, 55–67. https://archimer.ifremer.fr/doc/00355/46642/. https://doi.org/10.1016/j.jmarsys.2016.10.013 Cite
Aguirre-Velarde, A., Jean, F., Thouzeau, G., & Flye-Sainte-Marie, J. (2016). Effects of progressive hypoxia on oxygen uptake in juveniles of the Peruvian scallop, Argopecten purpuratus (Lamarck, 1819). Aquaculture, 451, 385–389. https://doi.org/10.1016/j.aquaculture.2015.07.030 Cite
Artigaud, S., Richard, J., Thorne, M. A. S., Lavaud, R., Flye-Sainte-Marie, J., Jean, F., Peck, L. S., Clark, M. S., & Pichereau, V. (2015). Deciphering the molecular adaptation of the king scallop (Pecten maximus) to heat stress using transcriptomics and proteomics. BMC Genomics, 16(1), 988. https://doi.org/10.1186/s12864-015-2132-x Cite
Marchais, V., Richard, J., Jolivet, A., Flye-Sainte-Marie, J., Thébault, J., Jean, F., Richard, P., Paulet, Y.-M., Clavier, J., & Chauvaud, L. (2015). Coupling experimental and field-based approaches to decipher carbon sources in the shell of the great scallop, Pecten maximus (L.). Geochimica Et Cosmochimica Acta, 168, 58–69. https://doi.org/10.1016/j.gca.2015.07.010 Cite
Aguirre-Velarde, A., Flye-Sainte-Marie, J., Mendo, J., & Jean, F. (2015). Sclerochronological records and daily microgrowth of the Peruvian scallop (Argopecten purpuratus, Lamarck, 1819) related to environmental conditions in Paracas Bay, Pisco, Peru. Journal of Sea Research, 99, 1–8. https://doi.org/10.1016/j.seares.2015.01.002 Cite
Artigaud, S., Lacroix, C., Richard, J., Flye-Sainte-Marie, J., Bargelloni, L., & Pichereau, V. (2015). Proteomic responses to hypoxia at different temperatures in the great scallop (Pecten maximus). Peerj, 3, e871. https://doi.org/10.7717/peerj.871 Cite
Picoche, C., Le Gendre, R., Flye-Sainte-Marie, J., Françoise, S., Maheux, F., Simon, B., & Gangnery, A. (2014). Towards the Determination of Mytilus edulis Food Preferences Using the Dynamic Energy Budget (DEB) Theory. PloS One, 9(10), e1097960. https://archimer.ifremer.fr/doc/00218/32895/. https://doi.org/10.1371/journal.pone.0109796 Cite
Paillard, C., Jean, F., Ford, S. E., Powell, E. N., Klinck, J. M., Hofmann, E. E., & Flye-Sainte-Marie, J. (2014). A theoretical individual-based model of Brown Ring Disease in Manila clams, Venerupis philippinarum. Journal of Sea Research, 91, 15–34. https://doi.org/10.1016/j.seares.2014.03.005 Cite
Lavaud, R., Flye-Sainte-Marie, J., Jean, F., Emmery, A., Strand, Ø., & Kooijman, S. A. (2014). Feeding and energetics of the great scallop, Pecten maximus, through a DEB model. Journal of Sea Research, 94, 5–18. https://archimer.ifremer.fr/doc/00162/27316/. https://doi.org/10.1016/j.seares.2013.10.011 Cite
Artigaud, S., Thorne, M. A., Richard, J., Lavaud, R., Jean, F., Flye-Sainte-Marie, J., Peck, L. S., Pichereau, V., & Clark, M. S. (2014). Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus. Marine Genomics, 15, 3–4. https://doi.org/10.1016/j.margen.2014.03.006 Cite
Artigaud, S., Lacroix, C., Pichereau, V., & Flye-Sainte-Marie, J. (2014). Respiratory response to combined heat and hypoxia in the marine bivalves Pecten maximus and Mytilus spp. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 175, 135–140. https://doi.org/10.1016/j.cbpa.2014.06.005 Cite
Jean, F., Flye-Sainte-Marie, J., Oudard, C., & Paillard, C. (2011). Handling enhances the development of brown ring disease signs in Ruditapes philippinarum. Journal of Shellfish Research, 30(1), 13–15. https://doi.org/10.2983/035.030.0103 Cite
Poulain, C., Lorrain, A., Flye-Sainte-Marie, J., Amice, E., Morize, E., & Paulet, Y.-M. (2011). An environmentally induced tidal periodicity of microgrowth increment formation in subtidal populations of the clam Ruditapes philippinarum. Journal of Experimental Marine Biology and Ecology, 397(1), 58–64. http://www.sciencedirect.com/science/article/pii/S0022098110004491 Cite
Flye-Sainte-Marie, J., Jean, F., Paillard, C., Kooijman, S.A.L.M.. (2009) A quantitative estimation of the energtic cost of brown ring disease in the Manila clam using Dynamic Energy Budget theory. Journal of Sea Research Special issue “the AquaDEB project” 62, 114–123.

Flye-Sainte-Marie, J., Soudant, P., Lambert, C., Le Goïc, N., Gonçalvez, M. Travers, M.-A., Paillard, C., Jean, F., (2009) Variability of the hemocyte parameters of Ruditapes philippinarum in the field during an annual cycle. Journal of Experimental Marine Biology and Ecology 377, 1-11.

Flye-Sainte-Marie, J., Jean, F., Ford, S. E., Paillard, C., (2008) Effect of sediment grain–size on development of brown ring disease in the Manila clam Ruditapes philippinarum. Aquaculture 278, 184–187.

N’Longphuirt, S., Clavier, J., and Grall, J., Chauvaud, L. Le Loc’h, F., and Le Berre, I., Flye-Sainte-Marie, J., Richard, J., Leynaert, A., (2007) Primary production and spatial distribution of subtidal microphytobenthos in a temperate coastal system, the Bay of Brest, France. Estuarine, Coastal and Shelf Science. 74 (3), 367-380.

Flye-Sainte-Marie, J., Jean, F., Paillard, C., Ford, S., Powell, E., Hofmann, E., Klinck,J., (2007) Ecophysiological dynamic model of individual growth of Ruditapes philippinarum. Aquaculture 266, 130143.

Flye-Sainte-Marie, J., Pouvreau, S., Paillard, C., Jean, F., (2007) Impact of Brown Ring Disease on the energy budget of the Manila clam Ruditapes philippinarum. Journal of Experimental Marine Biology and Ecology 349 (2), 378389.